PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_008610_rmtz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 418aa    MW: 45680.8 Da    PI: 5.4122
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_008610_rmtz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.39e-16178224455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  E+rRR riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Bv_008610_rmtz.t1 178 VHNLSEKRRRCRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 224
                        6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-20171234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-19171234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.65174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-16177228No hitNo description
PfamPF000102.6E-13178224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-18180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MVFTNNTSII NNPSSSSLQE TDDISLFLRQ ILHRSSSSTS PTSQPFTAAS SSVPSMRSHA  60
VDQLLSYGTP TLLNHNNNNI PGSTPSAVFS GSDRLSVNRV SHDTLNGVVL PPFTLPTASN  120
LSSESLSGSV QLRSFENNDF VEDNDCESEE GNEVVVGDME MNQQLSRNQS KRSRAAEVHN  180
LSEKRRRCRI NEKMKALQNL IPNSNKTDKA SMLDEAIEYL KQLQLQVQML SMRNGLNLHP  240
MCVPGGQGIL HPSQLSQMGI DIDNGSGSYD INMTTALNTI PETSNTMLNL SNQSTSSLRP  300
YLPVVPPTIN SEAMSFDPES CVPANFSSFQ LRNSPQVAGE RSIHHERLVA NNIDDAESLV  360
PTTTRLGRNP VEERMQQKKG PEETFLENVS GQKQNQNQLI ASKFSGLLAA SSGAQMTS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667415.10.0PREDICTED: transcription factor SPATULA-like isoform X1
SwissprotQ9FUA41e-49SPT_ARATH; Transcription factor SPATULA
TrEMBLA0A0J8B6840.0A0A0J8B684_BETVU; Uncharacterized protein
STRINGVIT_07s0031g00450.t012e-64(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-50bHLH family protein